miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST046414
species: Gossypium hirsutum
source: microPC, original name: miR171

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGAGCCGCGCCAATATCAC

miRNA*
GATGTTGGTGAGGTTCAATC

mismatches: 3
bulges: 0

View larger
pre-miRNA
GCGATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAATATCAC

dot-bracket secondary structure
..((((((((((.(((((((((.((.((((..(((((((.(((...))))))))))...)).)))).))))))))).))))))))))..


SIMILARITIES
miRBase tcc-MIR171c: 2e-38

PMRD ghr-miR171: 4e-43

microPC miR171: 2e-45
UniProt no hits

RFAM MIR171_1: 1e-25

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;