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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST046414
species: Gossypium hirsutum
source: microPC, original name: miR171

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGCCGCGCCAATATCAC

miRNA*
 GATGTTGGTGAGGTTCAATC

mismatches: 3
bulges: 0
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pre-miRNA
 GCGATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAATATCAC

dot-bracket secondary structure
..((((((((((.(((((((((.((.((((..(((((((.(((...))))))))))...)).)))).))))))))).))))))))))..


SIMILARITIES
miRBase tcc-MIR171c: 2e-38

PMRD ghr-miR171: 4e-43

microPC miR171: 2e-45		UniProt no hits

RFAM MIR171_1: 1e-25

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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