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Species belonging to selected taxon:
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Petunia axillaris subsp. axillaris
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST046415
species:
Nicotiana tabacum
miRNA family:
MIR319
source:
microPC, original name:
miR319
Taxonomy by NCBI:
Nicotiana tabacum
Nicotiana
Nicotianeae
Nicotianoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTTGGACTGAAGGGAGCTCC
miRNA*
AGCTTCCTTCACCCACTCA
mismatches:
4
bulges:
1
View larger
pre-miRNA
GAG
AGCTTCCTTCACCCACTCA
TGGAGGAGAACTGGGGTTGAATTAGCTGCCGCCTCATTCATCCAACCACTCAGTAGAAAGGAATAGGTTTTGTGCTAC
TGTGATTGAGTGAATGATGCGGGAGATAGTTTTCTATTCCTCTCTTTCCTTG
CTTGGACTGAAGGGAGCTCC
dot-bracket secondary structure
..(
(((((((((((.(((..((
.((((((((...(((((.((((((.((.((((.(((((((..(((.(((..(((((...((((....))))...))))
)))).)))..))))))).)))).)).))))))...))))))))).)))).))
..)))..)))))))))))).
SIMILARITIES
miRBase
ptc-MIR319f
:
6e-19
PMRD
ptc-miR319f
:
6e-19
microPC
miR319
:
1e-94
UniProt
no hits
RFAM
MIR159: 1e-17
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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