miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii

ABOUT THIS RECORD

ID: MNEST046429
species: Pinus taeda
source: microPC, original name: miR949

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TCCGGGAATCCAATGCGC

miRNA*
GTATTGATTTCCGGG

mismatches: 1
bulges: 1

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pre-miRNA
TCCGGGAATCCAATGCGCNTTCTTCTTGAACGCCTTTCAACGCGCGTGCTGTGCGTGAAAACGCGTTTAGGAGGAAGGTGTATTGATTTCCGGG

dot-bracket secondary structure
.(((((((((.(((((((.((((((((((((((.(((((.(((((.....))))))))))..)))))))))))))).)))))))))))))))).

UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
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