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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST046438
species: Pinus taeda
miRNA family: MIR166
source: microPC, original name: miR166

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCC

miRNA*
 AATGTTGTCTGGCTCGACT

mismatches: 4
bulges: 0
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pre-miRNA
 CGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCC

dot-bracket secondary structure
)((((((..((((((..((((..(((((((((((((...)))).)))))))))..))))..))))))..))))))


SIMILARITIES
miRBase pta-MIR166a: 1.0E-36

PMRD pta-miR166a: 1.0E-36

microPC miR166: 1.0E-36		UniProt no hits

RFAM 6mir-166: 0.0002

Identical with: pta-MIR166a from miRBase (MNEST039420), pta-miR166a from PMRD

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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