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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST046452
species: Oryza sativa
miRNA family: MIR166
source: microPC, original name: miR166

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCC

miRNA*
 AATGTTGTCTGGCTCGAGG

mismatches: 4
bulges: 0
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pre-miRNA
 GGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCC

dot-bracket secondary structure
((((((..((((((..((((((.((.((((....))))((((((......)))))).........))))))))..))))))..))))))


SIMILARITIES
miRBase osa-MIR166d: 2e-45

PMRD osa-miR166d: 2e-45

microPC miR166: 2e-45		UniProt no hits

RFAM mir-166: 3e-44

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence




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