ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR399
source: microPC, original name: miR399
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCCTG miRNA* AGGCGACTCTCCCTTGGCAAA mismatches: 5 bulges: 0 |
pre-miRNA
CAGGCGACTCTCCCTTGGCAAACGGATGATGATCACTATTCACCATGCAAATTAATGCATAATCTGCTTTGCCAAAGGAGAATTGCCCTG
dot-bracket secondary structure
..(((((.(((((.(((((((((((((..(((.......)))..(((((......))))).))))).)))))))).))))).)))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGGCGACTCTCCCTTGGCAAACGGATGATGATCACTATTCACCATGCAAATTAATGCATAATCTGCTTTGCCAAAGGAGAATTGCCCTG
dot-bracket secondary structure
..(((((.(((((.(((((((((((((..(((.......)))..(((((......))))).))))).)))))))).))))).)))))...
SIMILARITIES| miRBase vvi-MIR399h: 0.000001 PMRD vvi-miR399h: 0.000001 microPC miR399: 4e-46 | UniProt no hits RFAM mir-399: 0.00002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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