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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST046489
species: Oryza sativa
source: microPC, original name: miR160

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGTATGCC

miRNA*
CGTGCGAGGAGCCAAGCA

mismatches: 3
bulges: 0

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pre-miRNA
TGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTC
TACTGCGGATGGCGTGCGAGGAGCCAAGCA


dot-bracket secondary structure
.((.(((((((.(((((((((..(((((((..(((((((.....((((((((.(((((((((.....))))...))))))))).))))...))))))).)
))).)))..))))))))).))))))).)).



SIMILARITIES
miRBase osa-MIR160d: 9e-70

PMRD osa-miR160n: 9e-70

microPC miR160: 9e-70
UniProt no hits

RFAM mir-160: 2e-68

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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