ABOUT THIS RECORDspecies: Gossypium hirsutum
source: microPC, original name: miR398
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCTT miRNA* GGGGTGCCACCTAAGAACACAGG mismatches: 1 bulges: 2 |
pre-miRNA
GAGGGGTGCCACCTAAGAACACAGGTCATCCCTTAACCAAATAGCTTGTGTTCTCAGGTCACCCCTT
dot-bracket secondary structure
((((((((..((((.((((((((((..((...........))..)))))))))).))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGGGGTGCCACCTAAGAACACAGGTCATCCCTTAACCAAATAGCTTGTGTTCTCAGGTCACCCCTT
dot-bracket secondary structure
((((((((..((((.((((((((((..((...........))..)))))))))).))))))))))))
SIMILARITIES| miRBase gra-MIR398: 2e-32 PMRD ghr-miR398: 2e-32 microPC miR398: 3e-31 | UniProt no hits RFAM MIR398: 0.00005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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