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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST000465
species: Oryza sativa
miRNA family: MIR2123
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTAAAAGTCAACGGTGTCAAA

miRNA*
 GGACACCGTGGACTTCTTATAA

mismatches: 3
bulges: 1
View larger
pre-miRNA
 TTACTGTCTCCAGTTCGAAATGTTGGACACCGTGGACTTCTTATAACAAGTGTGACCCTTTATCTTAGTNAANAAATTTATGAAATATGTAAAACTATAT
ATGTACATAAAAGTATATTTGACAATAAATCAAATAATATGAAAAAAAGATAATTACATAGATTTTTGGAATAAGACGGATGGTCAAACACGTCCTAAAA
GTCAACGGTGTCAAATATTTTAAAACGGAGGGAGTACTACATAA

dot-bracket secondary structure
.((((.(((((..((.((((((((.((((((((.(((((.(((..((..((.(((((.(((.(((((...((..((((((((.((((((((.........
...))))))......(((((((.......))))))).(((.........))).)).)))))))).))....))))).))).))))).))..))..)))))
))).)))))))).)))))))).))..))))).))))........


SIMILARITIES
miRBase osa-MIR806c: 1e-33

PMRD osa-miR806c: 1e-33

microPC miR806: 0.000000003		UniProt no hits

RFAM MIR806: 2e-35		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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