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Species belonging to selected taxon:

Manihot esculenta



ABOUT THIS RECORD

ID: MNEST046504
species: Manihot esculenta
miRNA family: MIR162
source: microPC, original name: miR162

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCA

miRNA*
GAGGCAGCGGTTCATCGATC

mismatches: 4
bulges: 0

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pre-miRNA
TGGAGGCAGCGGTTCATCGATCTCTTCCTGGAGGATTTTGTTGTGAAATTAGCACAAACACATGAATCGATCGATAAACCTCTGCATCCA

dot-bracket secondary structure
.(((.((((.((((.(((((((...(((....)))...(((((((.......))).))))........))))))).)))).)))).))).


SIMILARITIES
miRBase ghr-MIR162a: 2e-29

PMRD ghr-miR162a: 2e-29

microPC miR162: 4e-46
UniProt no hits

RFAM MIR162_2: 6e-24

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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