miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST046525
species: Brassica napus
miRNA family: MIR400
source: microPC, original name: miR400

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TATGAGAGTATTATAAGTCAC

miRNA*
 GACTTATAAAGATCTCATG

mismatches: 3
bulges: 0
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pre-miRNA
 TATGAGAGTATTATAAGTCACCGCATTTGGTAATCAAGTGTTGCTTTCCCAAACGAAGTGACTTATAAAGATCTCATG

dot-bracket secondary structure
(((((((...(((((((((((..(.(((((.....(((.....)))..))))).)..)))))))))))...)))))))


SIMILARITIES
miRBase ath-MIR400: 0.0000000000002

PMRD ath-miR400: 0.0000000000002

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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