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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST046562
species: Gossypium hirsutum
source: microPC, original name: miR390

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAGCTCAGGAGGGATAGC

miRNA*
TATCCATCCTGAGTTT

mismatches: 1
bulges: 0

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pre-miRNA
AAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCGCTATCCATCCTGAGTTT

dot-bracket secondary structure
((((((((((.(((((((((.(((((.((((...(...((.((......)).))...)......)))).)).))).))))))))).))))))))))


SIMILARITIES
miRBase ghr-MIR390c: 1e-49

PMRD ghr-miR390c: 1e-49

microPC miR390: 1e-49
UniProt no hits

RFAM MIR390: 0.000000001

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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