ABOUT THIS RECORDspecies: Gossypium hirsutum
source: microPC, original name: miR390
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGC miRNA* TATCCATCCTGAGTTT mismatches: 1 bulges: 0 |
pre-miRNA
AAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCGCTATCCATCCTGAGTTT
dot-bracket secondary structure
((((((((((.(((((((((.(((((.((((...(...((.((......)).))...)......)))).)).))).))))))))).))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
AAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCGCTATCCATCCTGAGTTT
dot-bracket secondary structure
((((((((((.(((((((((.(((((.((((...(...((.((......)).))...)......)))).)).))).))))))))).))))))))))
SIMILARITIES| miRBase ghr-MIR390c: 1e-49 PMRD ghr-miR390c: 1e-49 microPC miR390: 1e-49 | UniProt no hits RFAM MIR390: 0.000000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
