ABOUT THIS RECORDspecies: Gossypium hirsutum
source: microPC, original name: miR396
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAAC miRNA* TCAATAAAGCTGTGGGA mismatches: 1 bulges: 0 |
pre-miRNA
TTCCACAGCTTTCTTGAACTGCAATTTCATGTAATCAGATCATTCATTCATTCATTGTCGTTGATGGTGTTGCATACATACGAGTACGTTGTTGCGGTTC
AATAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.((((((((((((...(((((.((.((....)).......(((..((...))..)))............)).))))).))))))))))
)).))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTCCACAGCTTTCTTGAACTGCAATTTCATGTAATCAGATCATTCATTCATTCATTGTCGTTGATGGTGTTGCATACATACGAGTACGTTGTTGCGGTTC
AATAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.((((((((((((...(((((.((.((....)).......(((..((...))..)))............)).))))).))))))))))
)).))))))))))))
SIMILARITIES| miRBase ghr-MIR396b: 7e-61 PMRD ghr-miR396c: 7e-61 microPC miR396: 7e-61 | UniProt no hits RFAM MIR396: 0.0000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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