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Species belonging to selected taxon:

Manihot esculenta



ABOUT THIS RECORD

ID: MNEST046577
species: Manihot esculenta
source: microPC, original name: miR319

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTC

miRNA*
GCTCCTTGAAGTCCAATAG

mismatches: 3
bulges: 0

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pre-miRNA
GAGCTCCTTGAAGTCCAATAGAGGATCTTGCTGGGTAGATTGAGCTGCTGAGCTATGGATCCCACAGCCCTATCTCATAATAAAGACTCTAGTCTTCTTG
GATAGGCTTGTGGCTTGCATATCTCAGGAGCTTCATTACCTCTTATGTTAGATCCTTGTTTGGATTGAAGGGAGCTC


dot-bracket secondary structure
(((((((((..(((((((..((((((((.((.((((((...(((((.(((((.((((.(..((((((.((((((.((.....(((((....)))))..))
)))))).))))))..).)))).))))).)))))..)))))).....)).))))))))..)))))))..)))))))))



SIMILARITIES
miRBase rco-MIR159: 2e-46

PMRD vvi-miR159c: 2e-28

microPC miR159: 1e-97
UniProt no hits

RFAM MIR159: 4e-45

Identical with: miR159 from microPC (MNEST046712)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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