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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST046581
species: Raphanus raphanistrum subsp. maritimus
source: microPC, original name: miR171

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGCGTCAATAT

miRNA*
 ATTGGCCTGGTTCATTCAGA

mismatches: 2
bulges: 0
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pre-miRNA
 ATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAATAT

dot-bracket secondary structure
((((((((.(((((((.((((((..((............................)).)))))).))))))).))))))))


SIMILARITIES
miRBase bna-MIR171g: 0.0000002

PMRD bna-miR171g: 0.0000002

microPC miR171: 9e-41		UniProt no hits

RFAM MIR171_1: 0.00002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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