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Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST046581
species: Raphanus raphanistrum subsp. maritimus
source: microPC, original name: miR171

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGCGTCAATAT

miRNA*
 ATTGGCCTGGTTCATTCAGA

mismatches: 2
bulges: 0
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pre-miRNA
 TATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAATAT

dot-bracket secondary structure
)((((((((.(((((((.((((((..((............................)).)))))).))))))).))))))))


SIMILARITIES
miRBase bna-MIR171g: 2.0E-7

PMRD bna-miR171g: 2.0E-7

microPC miR171: 9.0E-41		UniProt no hits

RFAM 1MIR171_1: 2.0E-5

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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