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Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST046607
species: Pinus taeda
miRNA family: MIR396
source: microPC, original name: miR396

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACTT

miRNA*
 GTTCAAGAAAACTGTGGGA

mismatches: 1
bulges: 0
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pre-miRNA
 TTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGAAAACTGTGGGA

dot-bracket secondary structure
((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..)))))))))))))).))))))))


SIMILARITIES
miRBase pta-MIR396: 3e-44

PMRD pta-miR396: 3e-44

microPC miR396: 3e-44		UniProt no hits

RFAM MIR396: 1e-40

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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Liczniki na strone;