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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST046660
species: Hordeum vulgare
miRNA family: MIR166
source: microPC, original name: miR166

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCC

miRNA*
 AATGTTGTCTGGCTCGGGG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GGAATGTTGTCTGGCTCGGGGTTCTCTTTCTTTCTCTCTCTCTCTATCTTCCTCCCCTCGGTCGATCCCTCCATGATCAGATCAAAGATCCGATGAGGGG
GGAGAGGAGAGTGAACGTGCGTAGATCTCGGACCAGGCTTCATTCC

dot-bracket secondary structure
((((((..((((((..(((((((..(...(.(((.(((((.((((......(((((((((...((((.......)))).((((...))))...)))))))
))))))))))).))).)...)..)))))))..))))))..))))))


SIMILARITIES
miRBase zma-MIR166a: 0.0000001

PMRD zma-miR166a: 0.0000001

microPC miR166: 2e-52		UniProt no hits

RFAM mir-166: 4e-51

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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