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Species belonging to selected taxon:

Lactuca sativa



ABOUT THIS RECORD

ID: MNEST046677
species: Lactuca sativa
miRNA family: MIR172
source: microPC, original name: miR172

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAATCTTGATGATGCTGCAT

miRNA*
 GCGGCATCTTCAAGATTCAC

mismatches: 1
bulges: 0
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pre-miRNA
 GTGCGGCATCTTCAAGATTCACATGCCAATATTCAACTCTAGATAAGTTTTTGGTTAATGGGTAATGAGAATCTTGATGATGCTGCAT

dot-bracket secondary structure
((((((((((.(((((((((.((((((..((((.((((..(((....)))..))))))))))).))).))))))))).))))))))))


SIMILARITIES
miRBase ath-MIR172a: 0.0000003

PMRD ath-miRf11033-akr: 0.0000003

microPC miR172: 7e-45		UniProt no hits

RFAM mir-172: 0.000005

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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