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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST046680
species:
Brassica napus
source:
microPC, original name:
miR399
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCCAAAGGAGAGTTGCCCT
miRNA*
GGAAACTCAACGTTGGCAA
mismatches:
4
bulges:
0
View larger
pre-miRNA
AG
GGAAACTCAACGTTGGCAA
GGAAACTATAATCAGTGAGACAATATTATTGCTCACAAGATTGAGGTTGAGTCTTT
GCCAAAGGAGAGTTGCCCT
dot-bracket secondary structure
((
((.(((((..(.(((((((
(((((((.(((((.(((((.((((...)))))))))..))))).))))...)))))
))))).)..))))).))))
SIMILARITIES
miRBase
vvi-MIR399b
:
0.00007
PMRD
vvi-miR399b
:
0.00007
microPC
miR399
:
1e-49
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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