ABOUT THIS RECORDspecies: Manihot esculenta
source: microPC, original name: miR171
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATTGAGCCGCGTCAATATC miRNA* TATTGGCGTGCCTCAATCTA mismatches: 3 bulges: 0 |
pre-miRNA
TATTGGCGTGCCTCAATCTAATTACATGGTTAAATGATATGTTTTAGCCAAGTACTTTTGATTGAGCCGCGTCAATATC
dot-bracket secondary structure
((((((((((.(((((((.((.(((.((((((((........)))))))).))).))..))))))).))))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TATTGGCGTGCCTCAATCTAATTACATGGTTAAATGATATGTTTTAGCCAAGTACTTTTGATTGAGCCGCGTCAATATC
dot-bracket secondary structure
((((((((((.(((((((.((.(((.((((((((........)))))))).))).))..))))))).))))))))))..
SIMILARITIES| miRBase vvi-MIR171b: 0.000004 PMRD vvi-miR171b: 0.000004 microPC miR171: 1e-39 | UniProt no hits RFAM MIR171_1: 0.00006 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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