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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST046721
species:
Brassica napus
miRNA family:
MIR159
source:
microPC, original name:
miR159
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTA
miRNA*
GAGCTCCTTAAAGTTCAAACG
mismatches:
2
bulges:
0
View larger
pre-miRNA
TA
GAGCTCCTTAAAGTTCAAACG
AGAGTTTAGCAGGGTAAAGAAAAGCTGCTAAGCTATGGATCCCATAAGCCCTAACCTTAAACATAGAAAAAGGATTT
TGGTTATATGGCTTGCATATCTCAGGAGCTTTAACTTGCCCTTTAATGGCTTTTACTCTTC
TTTGGATTGAAGGGAGCTCTA
dot-bracket secondary structure
((
(((((((((..((((((((.(
(((((..((((((((((...((((((.((.((.((((.(..(((((((((..((((((...........)))).)).
.)))).)))))..).)))).)).)).))))))...)))))))......)))...)))))).
))))))))..)))))))))))
SIMILARITIES
miRBase
aly-MIR159a
:
5e-75
PMRD
bra-miR159a
:
2e-68
microPC
miR159
:
1e-100
UniProt
no hits
RFAM
MIR159: 1e-66
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record