ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: MIR319
source: microPC, original name: miR319
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGACTGAAGGGAGCTCC miRNA* AGCTTTCTTCAGTCCACTCA mismatches: 5 bulges: 0 |
pre-miRNA
GAGCTTTCTTCAGTCCACTCATGGGTGGCGGTAGGGTTTAATTAGCTGCCGACTCATTCATTCAAATATTGAGTCCAAAAATTTCAAATCTCAAATGGAT
TCACTAAACGATTGAATGATGCGGGAGACAAATTGAATCTTAAGCTTCCTGTACTTGGACTGAAGGGAGCTCC
dot-bracket secondary structure
(((((..((((((((((...(((((.(((..((((((((((((.(((.(((..(((((((.((...((.((((((((..................)))))
))).))...)).)))))))..))).)).).)))))))))))).))).)))))...))))))))))..))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
GAGCTTTCTTCAGTCCACTCATGGGTGGCGGTAGGGTTTAATTAGCTGCCGACTCATTCATTCAAATATTGAGTCCAAAAATTTCAAATCTCAAATGGAT
TCACTAAACGATTGAATGATGCGGGAGACAAATTGAATCTTAAGCTTCCTGTACTTGGACTGAAGGGAGCTCC
dot-bracket secondary structure
(((((..((((((((((...(((((.(((..((((((((((((.(((.(((..(((((((.((...((.((((((((..................)))))
))).))...)).)))))))..))).)).).)))))))))))).))).)))))...))))))))))..))))).
SIMILARITIES| miRBase ptc-MIR319a: 1e-29 PMRD ptc-miR319a: 1e-29 microPC miR319: 3e-95 | UniProt no hits RFAM MIR159: 2e-28 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
