miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST046737
species: Lactuca virosa
miRNA family: MIR171
source: microPC, original name: miR171

Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGTGCCAATATC

miRNA*
 TGTTGGAATGGCTCAATCAAA

mismatches: 1
bulges: 0
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pre-miRNA
 GATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAATATC

dot-bracket secondary structure
((((((((.(((((((((((((((.(((.(.(((.(..........).))).).))).))))))))))))))).))))))))


SIMILARITIES
miRBase vvi-MIR171i: 0.0000000003

PMRD vvi-miR171i: 0.0000000003

microPC miR171: 2e-41		UniProt no hits

RFAM MIR171_1: 0.000000004

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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