miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST046739
species: Populus trichocarpa x Populus deltoides
miRNA family: MIR1448
source: microPC, original name: miR1448

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTTTCCAACGCCTCCCATAC

miRNA*
 ATGGGAGGATTGGACAGTG

mismatches: 2
bulges: 1
View larger
pre-miRNA
 GTATGGGAGGATTGGACAGTGCTGCTTGGTTTTAATTAACCAAAGTCTGTTCTTTCCAACGCCTCCCATAC

dot-bracket secondary structure
((((((((((.(((((.((.((.((((((((......)))).))))..)).)).)))))..))))))))))


SIMILARITIES
miRBase ptc-MIR1448: 2e-32

PMRD ptc-miR1448: 2e-32

microPC miR1448: 4e-30		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;