ABOUT THIS RECORDspecies: Gossypium hirsutum
source: microPC, original name: miR399
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCC miRNA* GCAACTCTCCTTAAGCAAA mismatches: 3 bulges: 0 |
pre-miRNA
GGGCAACTCTCCTTAAGCAAAAATGGATGTGCTTTTCTTTGCATAATTCGATTTTGCCAAAGGAGATTTGCCC
dot-bracket secondary structure
((((((.(((((((..((((((.(((((((((........)))).))))).))))))..))))))).))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGCAACTCTCCTTAAGCAAAAATGGATGTGCTTTTCTTTGCATAATTCGATTTTGCCAAAGGAGATTTGCCC
dot-bracket secondary structure
((((((.(((((((..((((((.(((((((((........)))).))))).))))))..))))))).))))))
SIMILARITIES| miRBase ghr-MIR399d: 5e-36 PMRD ghr-miR399b: 5e-36 microPC miR399: 5e-36 | UniProt no hits RFAM mir-399: 0.00000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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