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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST046762
species: Gossypium hirsutum
source: microPC, original name: miR399

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCAAAGGAGATTTGCCC

miRNA*
 GCAACTCTCCTTAAGCAAA

mismatches: 3
bulges: 0
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pre-miRNA
 GGGCAACTCTCCTTAAGCAAAAATGGATGTGCTTTTCTTTGCATAATTCGATTTTGCCAAAGGAGATTTGCCC

dot-bracket secondary structure
((((((.(((((((..((((((.(((((((((........)))).))))).))))))..))))))).))))))


SIMILARITIES
miRBase ghr-MIR399d: 5e-36

PMRD ghr-miR399b: 5e-36

microPC miR399: 5e-36		UniProt no hits

RFAM mir-399: 0.00000002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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