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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST046771
species:
Brassica rapa
source:
microPC, original name:
miR319
Taxonomy by NCBI:
Brassica rapa
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTC
miRNA*
GCTCCTTTAAGTTCAAACG
mismatches:
1
bulges:
0
View larger
pre-miRNA
GA
GCTCCTTTAAGTTCAAACG
AGAGTTTAGTAGGGTAAAGAAAAGCTGCTAAGCTATGGATCCCATAAGCCCTAATCCTTATAGAGAGAAAAAAAAGGAT
TTGGTTATATGGCTTGCATATCTTAGGAGCTTTAACTTGCCCTTTAATTGCTTTTACTCTTC
TTTGGATTGAAGGGAGCTC
dot-bracket secondary structure
((
((((((((.((((((((.(
(((((..((((((((((...((((((.(((((.((((.(..(((((((((..(((((((..............))))))
).)))).)))))..).)))).))))).))))))...)))))))......)))...)))))).
)))))))).))))))))))
SIMILARITIES
miRBase
aly-MIR159a
:
1e-66
PMRD
bra-miR159a
:
1e-60
microPC
miR319
:
1e-85
UniProt
no hits
RFAM
MIR159: 5e-54
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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