ABOUT THIS RECORDspecies: Lactuca sativa
source: microPC, original name: miR159
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGGGGTGAAGGGAGCTCC miRNA* AGCTCTCTATCGCCTCGACCC mismatches: 1 bulges: 1 |
pre-miRNA
GGAGCTCTCTATCGCCTCGACCCTGAAAGGAAATCGATCATGGTGGTTCATGGCTGCTCTTTCATGAATGCTTGTAGGTGCACCAATGTTGTTGTAGTGT
GCATTCTAAGGTTAGCATGAAGGTGGAGCCATGGTTTGATCATCTTTTTGGGATTGGGGTGAAGGGAGCTCC
dot-bracket secondary structure
((((((((((.(((((((((.((..((((((....(((((.......((((((((.(.((((((((...((((.((((((((((.((......)).).))
))).))))))))...)))))))).).))))))))..))))).))))))..)).)))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGAGCTCTCTATCGCCTCGACCCTGAAAGGAAATCGATCATGGTGGTTCATGGCTGCTCTTTCATGAATGCTTGTAGGTGCACCAATGTTGTTGTAGTGT
GCATTCTAAGGTTAGCATGAAGGTGGAGCCATGGTTTGATCATCTTTTTGGGATTGGGGTGAAGGGAGCTCC
dot-bracket secondary structure
((((((((((.(((((((((.((..((((((....(((((.......((((((((.(.((((((((...((((.((((((((((.((......)).).))
))).))))))))...)))))))).).))))))))..))))).))))))..)).)))))))))))))))))))
SIMILARITIES| miRBase ptc-MIR159e: 0.000009 PMRD ptc-miR159e: 0.000009 microPC miR319: 1e-94 | UniProt no hits RFAM MIR159: 0.0002 |
Identical with: miR319 from microPC (MNEST046103) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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