ABOUT THIS RECORDspecies: Helianthus argophyllus
source: microPC, original name: miR156
Taxonomy by NCBI:
Helianthus argophyllus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACAGAAGAGAGTGAGCAC miRNA* GCTCACTTCTCTTTCTGTC mismatches: 0 bulges: 2 |
pre-miRNA
GACAGAAGAGAGTGAGCACTCGCCGGCAACCGTATATAGAGATTATACTCTTGTTGGAATTATGCGTGTGCTCACTTCTCTTTCTGTC
dot-bracket secondary structure
(((((((((((((((((((.(((((((((..(((((.......)))))..)))))).......))).)))))))).)))).)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GACAGAAGAGAGTGAGCACTCGCCGGCAACCGTATATAGAGATTATACTCTTGTTGGAATTATGCGTGTGCTCACTTCTCTTTCTGTC
dot-bracket secondary structure
(((((((((((((((((((.(((((((((..(((((.......)))))..)))))).......))).)))))))).)))).)))))))
SIMILARITIES| miRBase osa-MIR156l: 0.00002 PMRD stu-miR156a: 0.00002 microPC miR156: 7e-45 | UniProt no hits RFAM mir-156: 0.0003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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