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Species belonging to selected taxon:
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Citrus clementina
ABOUT THIS RECORD
ID:
MNEST046817
species:
Citrus sinensis
miRNA family:
MIR162
source:
microPC, original name:
miR162
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCAG
miRNA*
GGAGGCAGCGGTTCATCGATC
mismatches:
3
bulges:
0
View larger
pre-miRNA
CT
GGAGGCAGCGGTTCATCGATC
ACTTTGTGCAAATTTTGTTGTGAAAAATAACACAAAATACATGAATCGA
TCGATAAACCTCTGCATCCAG
dot-bracket secondary structure
((
(((.((((.((((.(((((((
..((..((...(((((((.((........))))))))).))..))..))
))))).)))).)))).)))))
SIMILARITIES
miRBase
csi-MIR162
:
7e-48
PMRD
ghr-miR162a
:
5e-24
microPC
miR162
:
1e-46
UniProt
no hits
RFAM
MIR162_2: 4e-16
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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