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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST004684
species: Oryza sativa
miRNA family: MIRf1561
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACTGCACGTGGTCTCCTTCTC

miRNA*
 GAAGCAGGGCACGTGCATGC

mismatches: 2
bulges: 1
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pre-miRNA
 GAGCTAGCTAGCAGTGAGAAGGACCGCGTTGGAGAAGCAGGGCACGTGCATGCATATGTTCATCATCATCTTCTTCCTCCTCCTCTAGCTCCAGCCTTGT
GTGGGTTGGAAGTTTAGATAGAACTCGCACTGCACGTGGTCTCCTTCTCCATCCCGGTCTTTTTCTCACTTTGCCATAC

dot-bracket secondary structure
..(((....))).(((((((((((((...((((((((.(((.(((((((((((....((((......((((.(((((.(((......((....)).....
..)))..)))))...)))).))))..))).)))))))).))).))))))))...))))))..)))))))..........


SIMILARITIES
miRBase osa-MIR164a: 4e-85

PMRD osa-miR164a: 4e-85

microPC miR164: 0.00004		UniProt no hits

RFAM MIR164: 2e-75		most similar mature miRNAs

Identical with: osa-miRf11199-akr from PMRD (MNEST050414)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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