ABOUT THIS RECORDspecies: Allium cepa
miRNA family: MIR171
source: PMRD, original name: ace-miR171b
Taxonomy by NCBI:
Allium cepa Allium Allieae Allioideae Amaryllidaceae Asparagales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* ATCGGTAAAATGGATCAAT mismatches: 11 bulges: 1 |
pre-miRNA
AATCGGTAAAATGGATCAATGGTGACACCTCTGAGAAGGCCTTGTATGAGCTGAGCTTGAAGACGACGTCCCATGGGTTTGATAACGGATTCGGGTTCAG
ACGTGAACCGGTGGCAATGGAGGTGAGGACGTCTTTGAAGATGAAAGCGGATCTTAGGATGGGTTTCAACCCAAGGGAAGAAGGAGGTAACTGCTGATTG
AGCCGCGCCAATATC
dot-bracket secondary structure
....(((....(.(((((..(((...((((((..((((.((((.((.(((((...(((.(((..(((((((((((((((((....))))))).((((((.
...)))))).............))).)))))))))).))).....)))...)).)).)).)).))))..((....)).....)))))).)))..))))).
).....)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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AATCGGTAAAATGGATCAATGGTGACACCTCTGAGAAGGCCTTGTATGAGCTGAGCTTGAAGACGACGTCCCATGGGTTTGATAACGGATTCGGGTTCAG
ACGTGAACCGGTGGCAATGGAGGTGAGGACGTCTTTGAAGATGAAAGCGGATCTTAGGATGGGTTTCAACCCAAGGGAAGAAGGAGGTAACTGCTGATTG
AGCCGCGCCAATATC
dot-bracket secondary structure
....(((....(.(((((..(((...((((((..((((.((((.((.(((((...(((.(((..(((((((((((((((((....))))))).((((((.
...)))))).............))).)))))))))).))).....)))...)).)).)).)).))))..((....)).....)))))).)))..))))).
).....)))......
SIMILARITIES| miRBase zma-MIR171n: 0.00004 PMRD ace-miR171c: 3e-120 microPC miR171: 0.0007 | UniProt sp|O81316|SCL6_ARATH: 0.000000009 RFAM MIR171_1: 0.0008 |
Identical with: ace-miR170d from PMRD (MNEST046850) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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