miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST004691
species: Oryza sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATGTAAGTCATTCTAGCATTT

miRNA*
 ATGCTAGAATGACTTATATTG

mismatches: 0
bulges: 0
View larger
pre-miRNA
 CTCCCTTGCCAACTACTTCCTCCGTTTCATAATGTAAGTCATTCTAGCATTTTTCATATTCATATTGATGTTAATGAATCTAGATATATATATATGTATA
GATTCATTAACATCAATATGAATATGGGAAATGCTAGAATGACTTATATTGTGAAACGGAGGGAGTATTTTCAAGGTTT

dot-bracket secondary structure
...(((((..((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((....))))).))
))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)).)))))...


SIMILARITIES
miRBase osa-MIR809d: 6e-47

PMRD osa-miR809d: 6e-47

microPC miR809: 0.000000000000003		UniProt sp|Q6K1U0|P2C17_ORYSJ: 0.00006

RFAM MIR1122: 5e-48		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;