miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST046956
species: Arabidopsis thaliana
miRNA family: MIR167
source: PMRD, original name: ath-miR167m

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTG

miRNA*
 GGTCATCCTGCAGCTTCA

mismatches: 2
bulges: 1
View larger
pre-miRNA
 TGAAGCTGCCAGCATGATCTGGTAATCGCTACATACGACATACACACATCACTAAACTTCTTTATAATTTATGCACACACATACAGCTCTTAATGGCCAC
AACTCAAAGTTATAATTAGTGCATGATCTCTAGTTATTTGACTGCTTTTAATATATGTTTATGGATTCACGCATGTGTGTGTATGTACATAATTTACATG
CATGCACTTTGTGTATGGTACACATCAATTTGAACCCGTTCAAAATTCTGTTTTTATTAGTATATATATAGATGTATGTGGTGTGTGTGTCAGTGTGTGT
GTGTGTTTATAGATAGTAGTACTAGGTCATCCTGCAGCTTCA

dot-bracket secondary structure
.((((((((.((.(((((((((((...((((..((.((((((((((((.((((.........((.....))...((((((((((.(((......)))...
.......((((((((((((.(......).))))))))..)))).......(((((((((((((.....(((((.(((((((((((((.......))))))
)))))))..))))).(((((.(((....((((((....))))))....)))...))))).......))))))))))))).)))))))))).)))))))))
)))))))..))..))))..))))))))))).)))))))))).


SIMILARITIES
miRBase ath-MIR167d: 2e-156

PMRD ath-miR167d: 2e-156

microPC miR167: 0.00002		UniProt no hits

RFAM MIR167_1: 8e-153

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record




Liczniki na strone;