ABOUT THIS RECORDspecies: Aquilegia formosa x Aquilegia pubescens
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Aquilegia formosa x Aquilegia pubescens Aquilegia Ranunculaceae Ranunculales stem eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATATCATCATCATCATCTTCT miRNA* GAGATAATGCTGATCATTA mismatches: 4 bulges: 2 |
pre-miRNA
AGTAGTTTAGATACGAAAAGAGAAATATCATCATCATCATCTTCTTCTCTTCCTCCGAAAAGATCTGCACGAAATGCTTCATCTAAATACGATTTCGTCA
AGGTTAAAGTATGGCTTGGAGATAATGCTGATCATTACTACGTTTTGTCTAGATTTCT
dot-bracket secondary structure
((.((((((((((.((....((.(((...((((.(((.((((((.(((.(((....))).)))..((.(((((((................)))))))))
.(((((.....))))).)))))).))).)))).))).))...)).)))))))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGTAGTTTAGATACGAAAAGAGAAATATCATCATCATCATCTTCTTCTCTTCCTCCGAAAAGATCTGCACGAAATGCTTCATCTAAATACGATTTCGTCA
AGGTTAAAGTATGGCTTGGAGATAATGCTGATCATTACTACGTTTTGTCTAGATTTCT
dot-bracket secondary structure
((.((((((((((.((....((.(((...((((.(((.((((((.(((.(((....))).)))..((.(((((((................)))))))))
.(((((.....))))).)))))).))).)))).))).))...)).)))))))))).))
SIMILARITIES| miRBase no hits PMRD ghr-miR414f: 0.00003 microPC no hits | UniProt no hits RFAM mir-598: 0.0001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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