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Species belonging to selected taxon:

Arabidopsis thaliana



ABOUT THIS RECORD

ID: MNEST047056
species: Arabidopsis thaliana
miRNA family: MIR823
source: PMRD, original name: ath-miR823

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGGTGGTGATCATATAAGAT

miRNA*
CTTGTATGATCACTAACCATT

mismatches: 1
bulges: 0

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pre-miRNA
AATTTCAGAGATACTAATCCAAGAGATGGCGGATACGTTTTACAATCACGAATCTTGTATGATCACTAACCATTGGAACAATAAGAGTATATAATGAGTA
TATCACCATTTAGTTCTAGTGGGTGGTGATCATATAAGATTGGTAATGGTAACAGTGAAACATATCCCCCATCTATTGGGATTAATTAGTC


dot-bracket secondary structure
..............((((((...((((((.(((((.(((((((....((.((((((((((((((((((.((((((((((...((..(((((((.....))
))).))..))..)))))))))).)))))))))))))))))).))..((....))))))))).))))).))))))....)))))).......



SIMILARITIES
miRBase ath-MIR823: 5e-106

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ath-MIR823 from miRBase (MNEST040141)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence

references

[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"




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