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Species belonging to selected taxon:

Arabidopsis thaliana



ABOUT THIS RECORD

ID: MNEST047068
species: Arabidopsis thaliana
miRNA family: MIR839
source: PMRD, original name: ath-miR839

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TACCAACCTTTCATCGTTCCC

miRNA*
GAACGCATGAGAGGTTGGTAAA

mismatches: 0
bulges: 1

View larger
pre-miRNA
CTCACTCATGTGAGCAGAAAGAGTAGCATGATATTTTCTTCAAGGTCTTTACCAACCTTTCATCGTTCCCTTCTTTGCAATAACGCTGTTTTGCAAAACC
GTGATAGTGCTGAGCCGATGAGCCTCTAATGAAATTATAGACTCATCGGCTCAGGACCATTGCGGTTGTGCAAAACGGTGTTATTGCTGAGAAGGGAACG
CATGAGAGGTTGGTAAA
GACCTCAATGGAATCTTATGGTACTCTTTTTGCTCACATGAGTGAGT


dot-bracket secondary structure
(((((((((((((((((((((((((.(((((...((((....(((((((((((((((((((((((((((((((((.(((((((((((((((((((.((((
(..((.((.(((((((((((((.((.((((...)))).)).))))))))))))).)).))..))))).))))))))))))))))))).))))))))))))
.))))))))))))))))
)))))....))))..))))).))))))))))))))))))))))))).



SIMILARITIES
miRBase ath-MIR839: 2e-149

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ath-MIR839 from miRBase (MNEST040162)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence

references

[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"




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