miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST047068
species: Arabidopsis thaliana
miRNA family: MIR839
source: PMRD, original name: ath-miR839

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TACCAACCTTTCATCGTTCCC

miRNA*
GAACGCATGAGAGGTTGGTAAA

mismatches: 0
bulges: 1

View larger
pre-miRNA
CTCACTCATGTGAGCAGAAAGAGTAGCATGATATTTTCTTCAAGGTCTTTACCAACCTTTCATCGTTCCCTTCTTTGCAATAACGCTGTTTTGCAAAACC
GTGATAGTGCTGAGCCGATGAGCCTCTAATGAAATTATAGACTCATCGGCTCAGGACCATTGCGGTTGTGCAAAACGGTGTTATTGCTGAGAAGGGAACG
CATGAGAGGTTGGTAAA
GACCTCAATGGAATCTTATGGTACTCTTTTTGCTCACATGAGTGAGT


dot-bracket secondary structure
(((((((((((((((((((((((((.(((((...((((....(((((((((((((((((((((((((((((((((.(((((((((((((((((((.((((
(..((.((.(((((((((((((.((.((((...)))).)).))))))))))))).)).))..))))).))))))))))))))))))).))))))))))))
.))))))))))))))))
)))))....))))..))))).))))))))))))))))))))))))).



SIMILARITIES
miRBase ath-MIR839: 2e-149

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ath-MIR839 from miRBase (MNEST040162)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence

references

[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"




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