ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miR843
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTAGGTCGAGCTTCATTGGA miRNA* CTGTGAAGCTCGATCTAAAAG mismatches: 1 bulges: 0 |
pre-miRNA
AATGCCCAACAACTTCGCGTTATTTCTGAAAACTTCATATCTATTTTCTTTTAGGTCGAGCTTCATTGGAACCAAATGGTGGCTCATCCATCTATTACTA
AAGCTATACAGCAGGTGGACAAGCCATCATCATGTTCCTGTGAAGCTCGATCTAAAAGACTACAGATTTGAGATTTTCAAAAATAACATGAAGTACATTC
TCCAC
dot-bracket secondary structure
...........((((((.(((((((.((((((.((((.((((.(..((((((((((((((((((((.(((((...(((((((((..(((((((.......
..(((....))))))))))..)))))))))...))))).))))))))))))))))))))..).)))).)))).)))))).))))))).))))))......
.....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
AATGCCCAACAACTTCGCGTTATTTCTGAAAACTTCATATCTATTTTCTTTTAGGTCGAGCTTCATTGGAACCAAATGGTGGCTCATCCATCTATTACTA
AAGCTATACAGCAGGTGGACAAGCCATCATCATGTTCCTGTGAAGCTCGATCTAAAAGACTACAGATTTGAGATTTTCAAAAATAACATGAAGTACATTC
TCCAC
dot-bracket secondary structure
...........((((((.(((((((.((((((.((((.((((.(..((((((((((((((((((((.(((((...(((((((((..(((((((.......
..(((....))))))))))..)))))))))...))))).))))))))))))))))))))..).)))).)))).)))))).))))))).))))))......
.....
SIMILARITIES| miRBase ath-MIR843: 3e-114 PMRD ath-miRf10797-akr: 6e-69 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10797-akr from PMRD (MNEST047897) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Rajagopalan R, Vaucheret H, Trejo J, Bartel DP, Genes Dev. 20:3407-3425(2006)., "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
[2] Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW, J Exp Bot. 61:165-177(2010)., "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
[3] Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC, PLoS One. 2:e219(2007)., "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"
