miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004713
species: Oryza sativa
miRNA family: MIRf73
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CGCGAGGTACCGATACCTCGA

miRNA*
 GAGGTACCGATACCTCACGGT

mismatches: 3
bulges: 0
View larger
pre-miRNA
 GAGATTTACTCCGGTCCAACAAAAAGTAACTCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCTGGGTGGGTTGGGCATC
GTTAGATCCAACGATCGGAAATGATTTTGTACCGCGAGGTACCGATACCTCGAGATACTTTTTGTTGACCGAAGAAAAACTT

dot-bracket secondary structure
(((.(((.((.(((((.(((((((((((.(((((((((.((.((((((.((((((.(((((((((((((((((((((((((((..((((.......))))
))))))))))))))))))))))))))).)))))).)))))).)).))))))))).)))))))))))))))).)).))).)))


SIMILARITIES
miRBase no hits

PMRD osa-miRf10871-akr: 1e-26

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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