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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Limnanthes alba
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Tropaeolum majus
,
Carica papaya
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST047140
species:
Arabidopsis thaliana
source:
PMRD, original name:
ath-miRf10040-akr
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATACTCGACCAGGGGGTCGAGTGGT
miRNA*
ACTCGACCAGGTGGTCGAGTGAAG
mismatches:
4
bulges:
1
View larger
pre-miRNA
AGAC
ACTCGACCAGGTGGTCGAGTGAAG
TGATCGAATGACTCTCGTGGTGGTACTCGGCCAGAGGGTCGAGTGATGAGGCGAAGTGGTGAAGTCCT
ATAC
TCGACCAGGGGGTCGAGTGGT
CT
dot-bracket secondary structure
((((
((((((((...((((((((((.((
.(((...((.(((.((((..(..(((((((((....)))))))))..)..))))))).))...)))))
.)))
)))))))...)))))))).))
))
SIMILARITIES
miRBase
no hits
PMRD
ath-miRf10970-akr
:
1e-65
microPC
no hits
UniProt
no hits
RFAM
MIR854: 0.0000001
Identical with:
ath-miRf10041-akr
from PMRD (
MNEST047141
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record