miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Arabidopsis thaliana
ABOUT THIS RECORD
ID:
MNEST047157
species:
Arabidopsis thaliana
source:
PMRD, original name:
ath-miRf10057-akr
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCATGGTCAGATCCGTCATCCCACTTA
miRNA*
AGCGGGATGATGAATCCGACCATGATG
mismatches:
3
bulges:
0
View larger
pre-miRNA
GAGAGGCTATA
AGCGGGATGATGAATCCGACCATGATG
GTGTTGCAGAAATTTATGTATGATGTAGTTATTGTCCAGGGATCGAAACACCA
TCATGGTCA
GATCCGTCATCCCACTTA
TGTTTTCTT
dot-bracket secondary structure
((((((.((((
((.(((((((((.(((.((((((((((
(((((...((..((..((.(..(((....)))..).))..))))..)))))))
)))))))).
))).))))))))).))))
)).))))))
SIMILARITIES
miRBase
ath-MIR842
:
5e-68
PMRD
ath-miR842
:
5e-68
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ath-miR842
from PMRD (
MNEST047071
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record