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Species belonging to selected taxon:
Arabidopsis thaliana
ABOUT THIS RECORD
ID:
MNEST047214
species:
Arabidopsis thaliana
source:
PMRD, original name:
ath-miRf10114-akr
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GATCATGCTATCTCTTTGGA
miRNA*
CAAAGGGATCGCATTGATCCT
mismatches:
1
bulges:
1
View larger
pre-miRNA
GAGGAAGGATC
CAAAGGGATCGCATTGATCCT
AATTAAGGTGAATTCTCCCCATATTTTCTTTATAATTGGCAAATAAATCACAAAAATTTGCTTGGTTT
TG
GATCATGCTATCTCTTTGGA
TTCATCCTT
dot-bracket secondary structure
(((((.(((((
(((((((((.((((.(((((.
(((((.((.((....)).)).................(((((((...........)))))))))))).
.)
)))))))).)))))))))))
))).)))))
SIMILARITIES
miRBase
ath-MIR393a
:
2e-70
PMRD
ath-miR393a
:
2e-70
microPC
miR393
:
0.000006
UniProt
no hits
RFAM
no hits
Identical with:
ath-miR393a
from PMRD (
MNEST046998
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
degradome data
download this record