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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Limnanthes alba
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Tropaeolum majus
,
Carica papaya
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST047242
species:
Arabidopsis thaliana
source:
PMRD, original name:
ath-miRf10142-akr
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGCTCGAATGTCTGGTTGAGTGC
miRNA*
ACTCGACCCTGGTGGTCGAGTAATG
mismatches:
5
bulges:
1
View larger
pre-miRNA
CGGT
ACTCGACCCTGGTGGTCGAGTAATG
GGTCGAGTGATGAGCCAAAGTCTTCTTCTCTTCCTG
ATGCTCGAATGTCTGGTTGAGTGC
GG
dot-bracket secondary structure
..((
((((((((..(..(.(((((((.((
((..(((.((.((.......)).))..)))..))))
.))))))).)..).))))))))))
..
SIMILARITIES
miRBase
no hits
PMRD
ath-miRf10999-akr
:
3e-25
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record