ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10166-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGACCTTGGGGTCGAGTGGT miRNA* CACTCGACCTCGGGGTCGAG mismatches: 1 bulges: 0 |
pre-miRNA
GTGAAGACACTCGACCTCGGGGTCGAGTGAAGTGAACGAGTGATTGTTAGGTGGTAGAGGTGAAGACACTCGACCAGGGGGACGAGTGATGAGATGAAAT
CGAGAAGTCCCCTACTCGACCTGGGGGTCGAGTGGTCTTTGAAGGTCTTGAAGCTTCTACTCGACCTTGGGGTCGAGTGGTTTGAC
dot-bracket secondary structure
((.(((.((((((((((((((((((((((((((.(((((....)))))............(.(((((..((((((.(((((((...((((........))
))....)))))))((((((((....))))))))))))...))..))))).).))))).))))))))))))))))))))).))).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GTGAAGACACTCGACCTCGGGGTCGAGTGAAGTGAACGAGTGATTGTTAGGTGGTAGAGGTGAAGACACTCGACCAGGGGGACGAGTGATGAGATGAAAT
CGAGAAGTCCCCTACTCGACCTGGGGGTCGAGTGGTCTTTGAAGGTCTTGAAGCTTCTACTCGACCTTGGGGTCGAGTGGTTTGAC
dot-bracket secondary structure
((.(((.((((((((((((((((((((((((((.(((((....)))))............(.(((((..((((((.(((((((...((((........))
))....)))))))((((((((....))))))))))))...))..))))).).))))).))))))))))))))))))))).))).))
SIMILARITIES| miRBase no hits PMRD ath-miRf10165-akr: 8e-99 microPC no hits | UniProt no hits RFAM MIR854: 8e-16 |
Identical with: ath-miRf10784-akr from PMRD (MNEST047884) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
