miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea

ABOUT THIS RECORD

ID: MNEST047281
species: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10181-akr

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
GTTGTTGCCGTGAACGGCGTGAG

miRNA*
GACGCCGTTCACGGCAACTGCCG

mismatches: 2
bulges: 0

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pre-miRNA
ATCCATGGCACTGACGCCGTTCACGGCAACTGCCGTAGACGTTGTTGTTGCCGTGAACGGCGTGAGTGCCGTAGAT

dot-bracket secondary structure
(((.((((((((.(((((((((((((((((.((((....))..)).))))))))))))))))).)))))))).)))

SIMILARITIES

miRBase no hits

PMRD ath-miRf10502-akr: 8e-38

microPC no hits

UniProt no hits

RFAM no hits

Identical with: ath-miRf10502-akr from PMRD (MNEST047602)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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