ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10243-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGCCATGGTGGGAGCTG miRNA* GCTTCGGTTTCGGCTCCATC mismatches: 3 bulges: 0 |
pre-miRNA
GCGAGACAGCTTCGGTTTCGGCTCCATCTGCGTCGTCGCTTCGCAATCAGACGAACCGATCTAAGAGTTTCTCCTCGGCTCTCCGCTCCTTTCGAGTTTG
CTCTGCTTCCACGCGGTGGAGCCATGGTGGGAGCTGGGGATCGC
dot-bracket secondary structure
((((..(((((((.(((..(((((((.((((((.(..((...((((.....((((..((.(..((((((.......))))))..).))..))))...)))
)...))..).)))))))))))))..))).)))))))....))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
degradome data
download this record
GCGAGACAGCTTCGGTTTCGGCTCCATCTGCGTCGTCGCTTCGCAATCAGACGAACCGATCTAAGAGTTTCTCCTCGGCTCTCCGCTCCTTTCGAGTTTG
CTCTGCTTCCACGCGGTGGAGCCATGGTGGGAGCTGGGGATCGC
dot-bracket secondary structure
((((..(((((((.(((..(((((((.((((((.(..((...((((.....((((..((.(..((((((.......))))))..).))..))))...)))
)...))..).)))))))))))))..))).)))))))....))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q94A28|ACO3M_ARATH: 4e-20 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
degradome data
download this record
