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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Limnanthes alba
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Tropaeolum majus
,
Carica papaya
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST047343
species:
Arabidopsis thaliana
source:
PMRD, original name:
ath-miRf10243-akr
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAGCCATGGTGGGAGCTG
miRNA*
GCTTCGGTTTCGGCTCCATC
mismatches:
3
bulges:
0
View larger
pre-miRNA
GCGAGACA
GCTTCGGTTTCGGCTCCATC
TGCGTCGTCGCTTCGCAATCAGACGAACCGATCTAAGAGTTTCTCCTCGGCTCTCCGCTCCTTTCGAGTTTG
CTCTGCTTCCACGCGG
TGGAGCCATGGTGGGAGCTG
GGGATCGC
dot-bracket secondary structure
((((..((
(((((.(((..(((((((.(
(((((.(..((...((((.....((((..((.(..((((((.......))))))..).))..))))...)))
)...))..).))))))
)))))))..))).)))))))
....))))
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q94A28|ACO3M_ARATH: 4e-20
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
not a miRNA
additional data
degradome data
download this record